1.  Li J, Tian C, Xia Y, Mutanda I, Wang K, Wang Y* (2019), Production of plant-specific flavones baicalein and scutellarein in an engineered E. coli from available phenylalanine and tyrosine, Metab Eng, 52：124-133

2.  Liu H, E H, Xie D, Cheng W, Tao W, Wang Y* (2018) Acylated Aminooligosaccharides with Inhibitory Effects against α-Amylase from Streptomyces sp. HO1518. Mar. Drugs, 16(11)：403

3.  Sun Y, Chen Z, Li J, Li J, Lv H, Yang J, Li W, Xie D, Xiong Z, Zhang P, Wang Y* (2018) Diterpenoid UDP-glycosyltransferases from Chinese Sweet Tea and Ashitaba Complete the Biosynthesis of Rubusoside. Mol Plant. 11(10):1308-1311

4.  Li W, Zhou Y, You W, Yang M, Ma Y, Wang M, Wang Y, Yuan S, Xiao Y*（2018）. Development of Photoaffinity Probe for the Discovery of Steviol Glycosides Biosynthesis Pathway in Stevia rebuadiana and Rapid Substrate Screening. ACS Chem Biol. 17;13(8):1944-1949

5.  费理文, 王勇*（2018） 构建高效糖配体再生重组菌生物催化合成莱鲍迪苷D，食品科学, 39(22)：116-122

6.  戴住波*, 王勇, 周志华, 李盛英, 张学礼* (2018) 植物天然产物合成生物学研究. 中国科学院院刊, 33(11): 1228-1238 

7.  Shao J, Chen Q, Lv H, He J, Liu Z, Lu Y, Liu H*, Wang G*, Wang Y* (2017) (+)-Thalianatriene and (-)-Retigeranin B Catalyzed by Sesterterpene Synthases from Arabidopsis thaliana. Org Lett. 19 (7):1816–1819

8.  Yang G, Jia D, Jin L, Jiang Y, Wang Y, Jiang W, Gu Y* (2017). Rapid generation of universal synthetic promoters for controlled gene expression in both gas-fermenting and saccharolytic clostridium species. ACS Synth Biol. 6 (9): 1672–1678

9.  王勇* (2017) 新本草计划—基于合成生物学的药用植物活性代谢物研究, 生物工程学报, 33(3): 478-485

10.  Meng, H., Ma, Y., Mai, G.，Wang Y*，Liu C* (2017) Construction of precise support vector machine based models for predicting promoter strength, Quant Biol. 5(1): 90-98

11.  李微微, 孙雨伟, 杨靖亚* , 王勇*. (2017) 甜叶悬钩子(Rubus suavissimus S. Lee)中UDP-糖基转移酶基因的克隆、表达及序列分析. 工业微生物, 47(4): 53-62.

12.  杨玉凤, 费理文,李建华, 郝千里, 杨靖亚* , 王勇* (2017) 重组大肠杆菌全细胞催化合成莱鲍迪苷D，工业微生物, 48(5): 1-7.

13.  邵洁,李建华,王凯博, 王勇* (2017) 植物底盘：天然产物合成生物学研究的新热点，生物加工过程,15(5): 24-31.

14.  罗杰，王勇，郑亚洁，黄继荣*（2017）植物天然产物与合成生物学，植物生理学报，8：1345-1347

15.  杨悦，杨长青, 王勇，杨蕾*. (2017). 过表达丹参ggps研究丹参酮类的生物合成途径. 中国科学:生命科学(05), 130-138.

16.  Li J, M H, Wang Y*(2016) Synbiological systems for complex natural products biosynthesis, Synth Syst Biotechnol. 1 (04): 221-229.

17.  Meng L，Xiong Z，Chu J, Wang Y* (2016) Enhanced production of avermectin by deletion of type III PKSs biosynthetic cluster rpp in Streptomyces avermitilis, Lett Appl Microbiol. 63(5): 384-390

18.  Lv H, Li J, Wu Y, Garyali S, Wang Y* (2016) Transporter and its engineering for secondary metabolites, Appl Microbiol Biotechnol. 100(14):6119-30

19.  Qi X, Lin W, Ma M, Wang C, He Y, He N, Gao J, Zhou H, Xiao Y, Wang Y, Zhang P* (2016) Structural basis of rifampin inactivation by rifampin phosphotransferase. Proc Natl Acad Sci USA. 113(14):3803-8.

20.  Zhao C, Gao X, Liu X, Wang Y, Yang S, Wang F, Ren Y*(2016) Enhancing Biosynthesis of a Ginsenoside Precursor by Self-Assembly of Two Key Enzymes in Pichia pastoris. J Agric Food Chem. 64(17): 3380-5

21.  Meng H, Xiong Z，Song S, Wang J, Wang Y* (2016) Construction of polyketide overproducing E. coli strains via synthetic antisense RNAs based on in silico fluxome analysis and comparative transcriptome analysis. Biotechnol J. 11(4): 530-541

22.  Wang J, Li S, Xiong Z, Wang Y* (2016) Pathway mining-based integration of critical enzyme parts for de novo biosynthesis of steviol glycosides sweetener in Escherichia coli. Cell Res. 26(2), 258-261.

23.  Meng H, Wang Y* (2015) Cis-acting regulatory elements: from random screening to quantitative design, Quant Biol. 3(3), 107-114.

24.  Yang J，Xiong Z,Song S, Wang J, Wang Y*  (2015) Improving heterologous polyketide production in Escherichia coli by transporter engineering, Appl Microbiol Biotechnol. 99:8691–8700.

25.  Xiong Z, Yang Y, Liu Q, Sun C, Jin Y*, Wang Y* (2015) Endophytes in the plant Huperzia serrata: fungal diversity and discovery of a new pentapeptide，Arch Microbiol. 197(3):411-8.

26.  Xiong Z, Liu Q, Pan Z, Zhao N, Feng Z, Wang Y* (2015) Diversity and bioprospecting of culturable actinomycetes from marine sediment of the Yellow Sea, China, Arch Microbiol. 197(2): 299-309,

27.  Wang J, Xiong Z, Li S, Wang Y* (2015) Exploiting exogenous MEP pathway genes to improve the downstream isoprenoid pathway effects and enhance isoprenoid production in Escherichia coli, Process Biochem. 50(1): 24-32,

28.  汪建峰，王勇* (2015) 基于系统-合成生物学的人工细胞网络设计, 生物产业技术, 6: 36-43.

29.  宋书杰, 熊智强, 王勇* (2015) 利用合成调控RNA技术提高大肠杆菌异源合成红霉素前体6-脱氧红霉内酯B产量, 生物工程学报, 31(7): 1039-1049.

30.  汪建峰, 蒙海林, 王勇* (2015) 萜类合成生物学研究进展, 中国科学:生命科学, 45(10): 1040-1050.

31.  孟令卓, 王勇*, 储炬* (2015) 阿维链霉菌中一个双组分调控系统SAV931/932功能初探, 华东理工大学学报（自然科学版）, 41(4): 443-448.

32.  王艳萍，熊智强，杨静亚，王勇*（2015），黄海海域沉积物和庐山土壤样品中放线菌的分离、活性及生物多样性研究，工业微生物，45（3）：24-30

33.  Sun Z, Meng H, Li J, Wang J, Li Q, Wang Y*, Zhang Y* (2014). Identification of Novel Knockout Targets for Improving Terpenoids Biosynthesis in Saccharomyces cerevisiae. PLoS One. 9(11): e112615.

34.  Wang J, Xiong Z, Yang Y, Zhao N, Wang Y* (2014) Significant expression of a Chinese scorpion peptide, BmK1, in Escherichia coli through promoter engineering and gene dosage strategy. Biotechnol Appl Biochem. 61(4): 466-473.

35.  Wang J, Meng H, Xiong Z, Zhang S, Wang Y* (2014) Identification of novel knockout and up-regulated targets for improving isoprenoid production in E. coli. Biotechnol Lett. 36 (5): 1021-1027.

36.  欧广云, 熊智强, 周圣靓, 王勇*, 李平* (2014) 阿维链霉菌来源的磷脂酰丝氨酸合成酶基因的克隆及其在毕氏酵母中的异源表达, 工业微生物, 44(1): 28-33.

37.  汪建峰, 张嗣良*, 王勇*(2014) 大肠杆菌中从头合成白藜芦醇途径的设计及优化,  中国生物工程杂志, 34(2): 71-77.

38.  汪建峰, 熊智强, 张嗣良*, 王勇*(2014) 基于2-C-甲基-D-赤藓糖醇-4磷酸途径的产紫槐二烯大肠杆菌构建及其补糖策略优化, 生物工程学报, 30(1): 64-75.

39.  张明娥, 熊智强, 刘巧霞, 杨迎迎, 王勇*(2014) 一株真菌所产环缩酚酸肽类化合物的分离和鉴定, 华东理工大学学报（自然科学版），40(1): 58-64.

40.  潘钊龙, 熊智强, 刘巧霞, 郝玉有, 王勇*(2014) 海洋放线菌SMA-1代谢物多样性研究, 工业微生物, 44(4): 59-65.

41.  Meng H, Wang J, Xiong Z, Xu F, Zhao G, Wang Y* (2013) Quantitative design of regulatory elements based on high-precision strength prediction using artificial neural network. PLoS One. 8(4): e60288.

42.  Wang J, Xiong Z, Li S, Wang Y* (2013) Enhancing isoprenoid production through systematically assembling and modulating efflux pumps in Escherichia coli. Appl Microbiol Biotechnol. 97: 8057-8067.

43.  Xiong Z, Yang Y, Zhao N, Wang Y* (2013) Diversity of endophytic fungi and screening of fungal paclitaxel producer from Anglojap yew, Taxus x media. BMC Microbiol, 13: 71.

44.  Xiong Z, Wang J, Hao Y, Wang Y* (2013) Recent Advances in Marine Microbial Natural Products Discovery and Development. Marine Drugs, 11(3): 700-717.

45.  杨迎迎, 熊智强, 王勇*(2013) 3种药用植物内生真菌的多样性分析及产生物碱菌株的筛选, 中国抗生素杂志, 48(12): 901-908.

46.  汪建峰, 蒙海林, 熊智强, 王勇*(2013) 复杂天然产物合成人工生物系统的设计与构建, 生物工程学报, 29(8): 1146-1160.

47.  汪建峰, 蒙海林, 熊智强, 王勇*(2013) 基于合成生物学的微生物制造研究进展, 生物产业技术, 04: 12-23.

48.  Xiong Z, Wang Y* (2012) Draft Genome Sequence of the Marine Streptomyces sp. Strain AA1529, Isolated from the Yellow Sea. J Bacteriol. 194(19): 5474-5475.

49.  Xiong Z, Wang Y* (2012) Draft Genome Sequence of Marine-Derived Streptomyces sp. Strain AA0539, Isolated from the Yellow Sea, China. J Bacteriol. 194(23): 6622-6623.

50.  Wang J，Xiong Z , Meng H, Wang Y, Wang Y* (2012) Synthetic biology triggers new era of antibiotics development, Subcell Biochem. 64(64): 95-114.

51.  谭亿, 林灵, 周红霞, 王以光, 郝卫清, 杨兆勇*, 王勇* (2012) 一种发酵提取物中含卤有机化合物的早期鉴别方法, 中国抗生素杂志, 37(10): 741-744.

52.  陈士林*, 朱孝轩, 李春芳, 王勇, 姚辉, 孙超, 宋经元 (2012) 中药基因组学与合成生物学, 药学学报, 47(8): 1070-1078.

53.  Huan H*, Wang Y, Zhang S.  (2012) Down-regulation of Pm4CL1 gene expression in E. coli model by antisense mRNA. Biochem Genet. 50(7-8):529-37.

54.  Van Huan*, H., Van Giang, H., Van Thanh, N., Zhang, S., & Wang Y. (2012) Identification and functional analysis of the Pm4CL1 gene in transgenic tobacco plant as the basis for regulating lignin biosynthesis in forest trees. Mol breeding. 29(1): 173-180.

55.  Chen F, Lin L, Wang L, Tan Y, Zhou HX, Wang YG, Wang Y*, He WQ* (2011) Distribution of dTDP-glucose-4,6-dehydratase gene and diversity of potential glycosylated natural products in marine sediment-derived bacteria. Appl Microbiol Biotechnol. 90(4): 1347-1359.

56.  Meng H, Wang Y*, Zhang S, Wang X (2011) In silico analysis and experimental improvement of the terpenoid precursor supply pathways for taxadiene heterologous biosynthesis in Escherichia coli. Biotechnol Bioprocess Eng. 16 (2): 205-215.

57.  Meng H, Lu Z, Wang Y*, Zhang SL, Wang XN (2011) In silico analysis of erythromycin precursor 6-deoxyerythronolide B by heterologous biosynthesis in Escherichia coli. Biotechnol Bioprocess Eng. 16(3): 445-456.

58.  陈菲菲, 王勇*, 王以光, 郝卫清*(2011) 海洋微生物来源的天然产物开发研究进展,  应用与环境生物学报, 17(2): 287-294.

59.  林灵, 谭亿, 陈菲菲, 周红霞, 王以光, 郝卫清*, 王勇* (2011) 大连渤海老虎滩海域沉积物可培养放线菌的多样性, 微生物学报, 51(2): 262-269.

60.  陈菲菲, 林灵, 王以光, 周红霞, 陶佩珍, 郝卫清*, 王勇* (2011) 海洋细菌中活性化合物的筛选策略, 中国抗生素杂志, 36(5): 321-330.

61.  蒙海林, 汪建峰, 王勇*, 张嗣良, 王小宁 (2011) CYP725A4 分子序列分析与结构建模,华南理工大学学报（自然科学版）, 39(5): 154-159.

62.  卢志国, 汪建峰, 蒙海林, 熊智强, 王勇* (2011) 合成生物学与天然产物开发, 生命科学, 23(9): 900-911.

63.  Huan H V*, Giang H V, Wang Y, Zhang S. Overexpression and the enzymatic properties of the recombinant 4-coumarate: coenzyme A ligase, a key enzyme in lignin biosynthesis pathway. J Indian Acad Wood Sci. 2011, 8(1):21-25.

64.  Zhang H, Wang Y, Wu J, Skalina K, Pfeifer BA* (2010) Complete biosynthesis of erythromycin A and designed analogs using E. coli.as a heterologous host. Chem Biol. 17(11): 1232-1240.

65.  Ajikumar PK, Xiao W, Tyo K, Wang Y, Simeon F, Leonard E, Mucha O, Phon TH, Pfeifer BA*, Stephanopoulos G* (2010) Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli. Science. 330(6000): 70-74.

66.  Wang Y, Zhuang YP*, Wang P, Chu J, Zhang SL (2009) Regulation of meilingmycin in Streptomyces nanchangensis: effect of ammonium ion. Korean J Chem Eng. 27(3): 910-914.

67.  Wang Y, Chu J, Zhuang Y, Wang Y, Xia J, Zhang S* (2009) Industrial bioprocess control and optimization in the context of systems biotechnology. Biotechnol Adv. 27(6): 989-995.

68.  Hu H, Qian J*, Chu J*, Wang Y, Zhuang Y, Zhang S (2009) DNA shuffling of methionine adenosyltransferase gene leads to improved S-adenosyl-L-methionine production in Pichia pastoris. J Biotechnol. 141(3-4): 97-103.

69.  Zhang H, Wang Y, Boghigian BA, Pfeifer BA* (2009) Probing the heterologous metabolism supporting 6-deoxyerythronolide B biosynthesis in E. coli. Microbial Biotechnol. 2(3): 390-394.

70.  郝玉有, 王勇* (2009) 微型生物反应器与高通量菌种筛选, 生物产业技术, 4: 53-59.

71.  于慧敏*, 王勇(2009) 全局转录机器工程-工业生物技术新方法, 生物产业技术, 4: 40-46.

72.  Wang Y, Pfeifer BA* (2008) 6-Deoxyerythronolide B production through chromosomal localization of the deoxyerythronolide B synthase genes in E. coli. Metab Eng. 10(1): 33-38.

73.  Wang Y, Wang YG*, Zhang SL (2008) High frequency transformation of the industrial erythromycin-producing bacterium Saccharopolyspora erythraea. Biotechnol Lett. 30(2): 357-361.

74.  Parsa S1, Wang Y1(co-first author), Fuller J, Langer R, Pfeifer BA* (2008) A Comparison between Polymeric Microsphere and Bacterial Vectors for Macrophage P388D1 Gene Deliver, Pharm Res. 25 (5): 1202-1208.

75.  Zhang HR1, Wang Y1(co-first author), Pfeifer BA* (2008) Bacterial hosts for natural product production. Mol Pharm, 5 (2): 212-225.

76.  Ren YH, Wang Y, Zhang YF, Wei DZ* (2008) Overcoming multidrug resistance in a human carcinoma cells by an antisense oligodeoxynucleotide-doxorubicin conjugate in vitro and in vivo. Mol Pharm. 5(4): 579-587.

77.  Parsa S1, Wang Y1(co-first author), Rines K, Pfeifer BA* (2008) A high-throughput comparison of recombinant gene expression parameters for E. coli.mediated gene transfer to P388D1 macrophage cells. J Biotechnol. 137(1-4): 59-64.

78.  Wang Y, Boghigian BA, Pfeifer BB* (2007) Improving heterologous polyketide production in Escherichia coli by over-expression of an S-adenosylmethionine synthetase gene. Appl Microbiol Biotechnol, 77(2): 367-373.

79.  Wang Y, Wang YG*，Chu J, Zhuang YP, Zhang LX*, Zhang SL* (2007) Improved production of erythromycin A by expression of a heterologous gene encoding S-adenosylmethionine synthetase. Appl Microbiol Biotechnol. 75(4): 837-842.

申请专利： 

1.  王勇，李建华，田晨菲，合成黄芩素和野黄芩素的微生物、其制备方法及其应用，中国专利，201811043657.0

2.  王勇 陈卓 孙雨伟，黄酮碳苷单体化合物的应用，中国专利，申请号：201811000248.2   

3.  王勇，陈卓，孙雨伟，胡林福 章兴，黄酮碳苷单体的用途，中国专利，申请号：201811296758.9

4.  王勇，鄂恒超，刘海利，具有α-糖苷酶抑制活性的酰基他定类化合物、其制备方法及应用，中国专利，申请号：201810337856.6

5.  王勇，孙雨伟，陈卓，李建华，新型UDP-糖基转移酶及其应用，中国专利，申请号：201710758391.7

6.  王勇，孙雨伟，陈卓，新型糖基转移酶及其应用，中国专利，申请号：201711250803.2

7.  王勇，王国栋，刘海利，邵洁 陈庆文，拟南芥三烯甲素及其制备方法，中国专利，申请号:201710178601.5

8.  王勇，郝玉有，一种阵列式高通量分离培养微生物装置，中国专利，ZL 201210548502.9

9.  王勇，郝玉有，顾东，王立琴，用于发酵的棉籽蛋白及其制备方法和应用，中国专利，CN 103215310 B

10.  王勇，汪建峰，熊智强，异源合成广霍香醇的方法和微生物,中国专利，申请号：2014103093474.4

11.  王勇, 熊智强, 李诗渊, 汪建峰. 高效合成萜类化合物的重组大肠杆菌底盘细胞及其制法和应用, 中国专利 ZL 201310501221.2， US 9611498 B2

12.  王勇, 熊智强, 宋书杰, 刘巧霞，汪建峰. 一种提高大肠杆菌异源合成聚酮类化合物的方法和用途, 中国专利, 申请号: 201410338738.9.

13.  王勇, 熊智强, 李诗渊, 汪建峰. 利用微生物生产甜菊糖苷类化合物的方法, ZL 201310460493.2；US 9611498 B2； PCT/CN2013/084618.

14.  王勇, 熊智强, 汪建峰, 李诗渊, 刘巧霞. 一种新的贝壳烯酸-13α-羟化酶、其编码基因及其应用, 专利号：ZL 201410105875.8；PCT专利, 申请号:PCT/CN2015/074344

15.  Blaine Pfeifer, Yong Wang, Genetically modified E. coli Strains Overexpressing Genes Involved in Non-mevalonate 1-deoxy-D- xylulose-5-phosphate Synthetic Pathway and Uses Thereof’, US Patent Filed 4/2009, Application # 12/420,482.